The global Functional Annotation of Farm Animal Genomes initiative (FAANG) aims to improve animal breeding by improved genomic prediction via integration of functional genomics information. The GENESWitCH project has produced extensive functional genomics information for a variety of important tissues at early embryonic timepoints for both chickens and pigs. These datasets will be integrated to produce both tissue and time-point specific transcript, gene, and regulatory annotation for both species. In this paper, we describe the aims of the project, and the initial release of both raw and processed data.
Proceedings of 12th World Congress on Genetics Applied to Livestock Production (WCGALP)
Technical and species orientated innovations in animal breeding, and contribution of genetics to solving societal challenges
EditorsR.F. Veerkamp and Y. de Haas
Published: 2022 Pages: 3364
eISBN: 978-90-8686-940-4
Book Type: Conference Proceedings
550. Extensive functional genomics information from early developmental time points for pig and chicken
H. Acloque Related information
1Paris-Saclay University, INRAE, AgroParisTech, GABI, 78350 Jouy-en-Josas, France.
, P.W. Harrison Related information2EMBL – European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, CB10 1SD, United Kingdom.
, W. Lakhal Related information3Epigenetics R&D, Diagenode S.A., Liège Science Park, Ru du Bois Saint-Jean 3, 4102 Liège, Belgium.
, F. Martin Related information2EMBL – European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, CB10 1SD, United Kingdom.
, A.L. Archibald Related information4The Roslin Institute and R(D)SVS, University of Edinburgh, Easter Bush, EH25 9RG, United Kingdom.
, M. Beinat Related information1Paris-Saclay University, INRAE, AgroParisTech, GABI, 78350 Jouy-en-Josas, France.
, M. Davey Related information4The Roslin Institute and R(D)SVS, University of Edinburgh, Easter Bush, EH25 9RG, United Kingdom.
, S. Djebali Related information5IRSD, Université de Toulouse, INSERM, INRA, ENVT, UPS, 31024 Toulouse, France; France.
, S. Foissac Related information6GenPhySE, Université de Toulouse, INRAE, ENVT, 31326 Castanet Tolosan, France.
, S. Guizard Related information4The Roslin Institute and R(D)SVS, University of Edinburgh, Easter Bush, EH25 9RG, United Kingdom.
, C. Guyomar Related information6GenPhySE, Université de Toulouse, INRAE, ENVT, 31326 Castanet Tolosan, France.
, R. Kuo Related information4The Roslin Institute and R(D)SVS, University of Edinburgh, Easter Bush, EH25 9RG, United Kingdom.
, C. Kurylo Related information6GenPhySE, Université de Toulouse, INRAE, ENVT, 31326 Castanet Tolosan, France.
, O. Madsen Related information7Animal Breeding and Genomics, Wageningen University and Research, 6700 AH Wageningen, the Netherlands.
, K. Miedzinska Related information4The Roslin Institute and R(D)SVS, University of Edinburgh, Easter Bush, EH25 9RG, United Kingdom.
, M. Mongellaz Related information1Paris-Saclay University, INRAE, AgroParisTech, GABI, 78350 Jouy-en-Josas, France.
, J. Smith Related information4The Roslin Institute and R(D)SVS, University of Edinburgh, Easter Bush, EH25 9RG, United Kingdom.
, J. Smith Related information4The Roslin Institute and R(D)SVS, University of Edinburgh, Easter Bush, EH25 9RG, United Kingdom.
, A. Sokolov Related information2EMBL – European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, CB10 1SD, United Kingdom.
, J. de Vos Related information7Animal Breeding and Genomics, Wageningen University and Research, 6700 AH Wageningen, the Netherlands.
, E. Giuffra Related information1Paris-Saclay University, INRAE, AgroParisTech, GABI, 78350 Jouy-en-Josas, France.
, M. Watson Related information4The Roslin Institute and R(D)SVS, University of Edinburgh, Easter Bush, EH25 9RG, United Kingdom.
*Corresponding author: mick. watson@roslin. ed. ac. uk
*Corresponding author: mick.
Pages: 2281 - 2284
Published Online: February 09, 2023
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